protmapper
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Protmapper modules reference
REST API
protmapper
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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
A
ACC_ID (protmapper.phosphosite_client.PhosphoSite attribute)
B
begin (protmapper.resources.Feature attribute)
C
CST_CAT (protmapper.phosphosite_client.PhosphoSite attribute)
D
default_mapper (in module protmapper.api)
description (protmapper.api.MappedSite attribute)
DOMAIN (protmapper.phosphosite_client.PhosphoSite attribute)
download_resource_file() (protmapper.resources.ResourceManager method)
E
end (protmapper.resources.Feature attribute)
error_code (protmapper.api.MappedSite attribute)
F
Feature (class in protmapper.resources)
G
GENE (protmapper.phosphosite_client.PhosphoSite attribute)
gene_name (protmapper.api.MappedSite attribute)
get_chains() (in module protmapper.uniprot_client)
get_create_resource_file() (protmapper.resources.ResourceManager method)
get_download_fun() (protmapper.resources.ResourceManager method)
get_entrez_id() (in module protmapper.uniprot_client)
get_family_members() (in module protmapper.uniprot_client)
get_feature_by_id() (in module protmapper.uniprot_client)
get_feature_of() (in module protmapper.uniprot_client)
get_features() (in module protmapper.uniprot_client)
get_function() (in module protmapper.uniprot_client)
get_gene_name() (in module protmapper.uniprot_client)
get_gene_synonyms() (in module protmapper.uniprot_client)
get_hgnc_id() (in module protmapper.uniprot_client)
get_id_from_entrez() (in module protmapper.uniprot_client)
get_id_from_mgi() (in module protmapper.uniprot_client)
get_id_from_mgi_name() (in module protmapper.uniprot_client)
get_id_from_mnemonic() (in module protmapper.uniprot_client)
get_id_from_rgd() (in module protmapper.uniprot_client)
get_id_from_rgd_name() (in module protmapper.uniprot_client)
get_ids_from_refseq() (in module protmapper.uniprot_client)
get_length() (in module protmapper.uniprot_client)
get_mgi_id() (in module protmapper.uniprot_client)
get_mnemonic() (in module protmapper.uniprot_client)
get_modifications() (in module protmapper.uniprot_client)
get_mouse_id() (in module protmapper.uniprot_client)
get_organism_id() (in module protmapper.uniprot_client)
get_primary_id() (in module protmapper.uniprot_client)
get_protein_synonyms() (in module protmapper.uniprot_client)
get_psp_mapping() (protmapper.api.ProtMapper method)
get_rat_id() (in module protmapper.uniprot_client)
get_resource_file() (protmapper.resources.ResourceManager method)
get_resource_ids() (protmapper.resources.ResourceManager method)
get_rgd_id() (in module protmapper.uniprot_client)
get_signal_peptide() (in module protmapper.uniprot_client)
get_synonyms() (in module protmapper.uniprot_client)
H
has_data() (in module protmapper.phosphosite_client)
has_mapping() (protmapper.api.MappedSite method)
has_resource_file() (protmapper.resources.ResourceManager method)
HU_CHR_LOC (protmapper.phosphosite_client.PhosphoSite attribute)
I
id (protmapper.resources.Feature attribute)
InvalidSiteException
is_human() (in module protmapper.uniprot_client)
is_main (protmapper.resources.Feature attribute)
is_mouse() (in module protmapper.uniprot_client)
is_rat() (in module protmapper.uniprot_client)
is_reviewed() (in module protmapper.uniprot_client)
is_secondary() (in module protmapper.uniprot_client)
L
load_site_map() (in module protmapper.api)
LT_LIT (protmapper.phosphosite_client.PhosphoSite attribute)
M
map_peptide_to_human_ref() (protmapper.api.ProtMapper static method)
map_sitelist_to_human_ref() (protmapper.api.ProtMapper method)
map_to_human_ref() (protmapper.api.ProtMapper method)
map_to_human_site() (in module protmapper.phosphosite_client)
mapped_id (protmapper.api.MappedSite attribute)
(protmapper.phosphosite_client.PspMapping attribute)
mapped_pos (protmapper.api.MappedSite attribute)
(protmapper.phosphosite_client.PspMapping attribute)
mapped_res (protmapper.api.MappedSite attribute)
(protmapper.phosphosite_client.PspMapping attribute)
MappedSite (class in protmapper.api)
MOD_RSD (protmapper.phosphosite_client.PhosphoSite attribute)
motif (protmapper.phosphosite_client.PspMapping attribute)
MS_CST (protmapper.phosphosite_client.PhosphoSite attribute)
MS_LIT (protmapper.phosphosite_client.PhosphoSite attribute)
MW_kD (protmapper.phosphosite_client.PhosphoSite attribute)
N
name (protmapper.resources.Feature attribute)
not_invalid() (protmapper.api.MappedSite method)
O
ORGANISM (protmapper.phosphosite_client.PhosphoSite attribute)
orig_pos (protmapper.api.MappedSite attribute)
orig_res (protmapper.api.MappedSite attribute)
P
PhosphoSite (class in protmapper.phosphosite_client)
PROTEIN (protmapper.phosphosite_client.PhosphoSite attribute)
ProtMapper (class in protmapper.api)
protmapper.api (module)
protmapper.phosphosite_client (module)
protmapper.resources (module)
protmapper.rest_api (module)
protmapper.uniprot_client (module)
PspMapping (class in protmapper.phosphosite_client)
Q
query_protein (in module protmapper.uniprot_client)
R
ResourceManager (class in protmapper.resources)
respos (protmapper.phosphosite_client.PspMapping attribute)
S
SITE_7_AA (protmapper.phosphosite_client.PhosphoSite attribute)
SITE_GRP_ID (protmapper.phosphosite_client.PhosphoSite attribute)
sites_only() (in module protmapper.phosphosite_client)
T
type (protmapper.resources.Feature attribute)
U
up_id (protmapper.api.MappedSite attribute)
V
valid (protmapper.api.MappedSite attribute)
verify_location() (in module protmapper.uniprot_client)
verify_modification() (in module protmapper.uniprot_client)
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